Sequence Similarity Clusters for the Entities in PDB 1K8D

Entity #1 | Chains: A
QA-2 antigen protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56760
95 % 1 1 40413
90 % 1 1 38621
70 % 451 705 6
50 % 452 710 6
40 % 485 761 10
30 % 523 881 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 74 133 95
95 % 109 223 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 109 223 66
70 % 549 898 4
50 % 561 920 3
40 % 561 920 8
30 % 561 920 12
Entity #3 | Chains: P
60S RIBOSOMAL PROTEIN protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.