Sequence Similarity Clusters for the Entities in PDB 1K8A

Entity #1 | Chains: A
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2413
95 % 16 20 3053 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 16 20 3096
70 % 17 27 2150
50 % 60 74 706
40 % 60 79 688
30 % 60 79 686
Entity #11 | Chains: K
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 425
95 % 60 74 596 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 74 626
70 % 60 74 667
50 % 60 74 711
40 % 61 77 712
30 % 61 78 695
Entity #12 | Chains: L
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 44 839
95 % 60 68 667 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 60 68 695
70 % 60 68 747
50 % 76 176 200
40 % 76 176 222
30 % 165 524 31
Entity #13 | Chains: M
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 424
95 % 60 74 595 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 60 74 625
70 % 60 74 664
50 % 60 74 707
40 % 60 74 743
30 % 164 504 37
Entity #14 | Chains: N
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2397
95 % 16 20 3032 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 16 20 3076
70 % 60 68 739
50 % 77 172 210
40 % 77 172 233
30 % 77 172 239
Entity #15 | Chains: O
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 422
95 % 60 74 593 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 60 74 623
70 % 60 74 661
50 % 60 76 682
40 % 60 76 719
30 % 60 79 684
Entity #16 | Chains: P
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 477
95 % 60 68 668 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 60 68 697
70 % 60 68 749
50 % 60 70 768
40 % 60 70 803
30 % 60 70 793
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 2201
95 % 60 68 666 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 60 68 693
70 % 60 68 745
50 % 60 68 797
40 % 60 72 776
30 % 60 72 765
Entity #18 | Chains: R
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 478
95 % 60 68 670 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 68 699
70 % 60 68 752
50 % 60 70 769
40 % 60 70 804
30 % 60 71 778
Entity #19 | Chains: S
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 67 491
95 % 60 68 664 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 60 68 691
70 % 60 68 742
50 % 60 68 794
40 % 60 68 831
30 % 76 175 233
Entity #2 | Chains: B
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 429
95 % 60 74 600 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 60 74 630
70 % 60 74 672
50 % 60 76 686
40 % 60 78 699
30 % 148 411 60
Entity #21 | Chains: U
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 428
95 % 60 74 599 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 74 629
70 % 60 74 670
50 % 76 180 199
40 % 76 180 217
30 % 76 180 226
Entity #22 | Chains: V
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 70 458
95 % 57 70 640 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 57 70 665
70 % 57 70 719
50 % 57 70 770
40 % 57 70 806
30 % 57 70 795
Entity #23 | Chains: W
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 430
95 % 60 74 601 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 60 74 631
70 % 60 74 673
50 % 60 74 715
40 % 145 377 57
30 % 148 403 64
Entity #24 | Chains: X
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 475
95 % 60 68 665 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 68 692
70 % 60 68 743
50 % 60 68 795
40 % 60 70 800
30 % 60 71 775
Entity #25 | Chains: Y
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 480
95 % 60 68 672 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 60 68 701
70 % 60 68 754
50 % 60 68 800
40 % 60 68 835
30 % 60 68 820
Entity #26 | Chains: Z
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 63 549
95 % 56 63 759 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 56 63 786
70 % 56 63 835
50 % 56 63 880
40 % 56 63 906
30 % 56 63 889
Entity #27 | Chains: 1
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2478
95 % 16 20 3098 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 16 20 3140
70 % 17 21 2891
50 % 23 30 1927
40 % 39 129 303
30 % 60 152 268
Entity #28 | Chains: 2
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 482
95 % 60 68 675 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 68 704
70 % 60 68 758
50 % 60 69 782
40 % 60 69 820
30 % 60 69 809
Entity #29 | Chains: 3
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2483
95 % 60 68 676 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 60 68 705
70 % 60 68 759
50 % 76 173 206
40 % 76 173 229
30 % 76 173 236
Entity #3 | Chains: C
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 2185
95 % 60 68 660 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 60 68 687
70 % 60 68 737
50 % 76 171 209
40 % 76 173 228
30 % 76 173 235
Entity #30 | Chains: 4
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 479
95 % 60 68 671 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 60 68 700
70 % 60 68 753
50 % 60 68 799
40 % 60 68 834
30 % 76 169 244
Entity #4 | Chains: D
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 67 489
95 % 60 74 584
90 % 60 74 615
70 % 60 74 657
50 % 60 74 701
40 % 76 180 215
30 % 76 180 224
Entity #5 | Chains: E
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 44 833
95 % 60 74 589 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 60 74 621
70 % 60 74 659
50 % 60 74 703
40 % 60 76 717
30 % 61 78 691
Entity #6 | Chains: F
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 423
95 % 60 74 594 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 60 74 624
70 % 60 74 662
50 % 60 74 705
40 % 77 180 216
30 % 77 180 225
Entity #7 | Chains: G
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 474
95 % 60 68 663 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 68 690
70 % 60 68 741
50 % 60 68 793
40 % 76 174 227
30 % 165 515 34
Entity #8 | Chains: H
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 21 2213
95 % 17 21 2857
90 % 60 68 696
70 % 60 68 748
50 % 84 105 324
40 % 92 123 281
30 % 92 125 286
Entity #9 | Chains: I
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 44 826
95 % 57 64 737 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 57 64 766
70 % 57 64 811
50 % 57 64 863
40 % 57 64 887
30 % 57 65 864

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.