Sequence Similarity Clusters for the Entities in PDB 1K8A

Entity #1 | Chains: A
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2921
95 % 16 20 3227 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 16 20 3284
70 % 17 27 2376
50 % 60 74 780
40 % 60 79 753
30 % 60 79 762
Entity #11 | Chains: K
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 518
95 % 60 74 649 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 74 668
70 % 60 74 714
50 % 60 74 779
40 % 61 78 779
30 % 61 78 773
Entity #12 | Chains: L
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 593
95 % 60 68 729 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 60 68 755
70 % 60 68 802
50 % 77 197 204
40 % 177 589 21
30 % 177 589 34
Entity #13 | Chains: M
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 523
95 % 60 74 659 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 60 74 682
70 % 60 74 727
50 % 60 74 788
40 % 77 194 223
30 % 77 194 242
Entity #14 | Chains: N
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2846
95 % 16 20 3163 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 16 20 3215
70 % 60 68 803
50 % 78 196 205
40 % 78 196 222
30 % 78 196 240
Entity #15 | Chains: O
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 515
95 % 60 74 644 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 60 74 669
70 % 60 74 715
50 % 60 76 756
40 % 60 76 791
30 % 60 79 758
Entity #16 | Chains: P
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 606
95 % 60 68 746 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 60 68 772
70 % 60 68 820
50 % 60 70 838
40 % 60 70 873
30 % 60 70 860
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 2795
95 % 60 68 749 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 60 68 775
70 % 60 68 823
50 % 60 68 877
40 % 60 72 839
30 % 60 72 840
Entity #18 | Chains: R
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 594
95 % 60 68 730 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 68 756
70 % 60 68 804
50 % 60 70 848
40 % 60 70 880
30 % 60 71 854
Entity #19 | Chains: S
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 67 623
95 % 60 68 737 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 60 68 762
70 % 60 68 811
50 % 60 68 866
40 % 60 68 893
30 % 77 194 243
Entity #2 | Chains: B
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 528
95 % 60 74 661 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 60 74 684
70 % 60 74 731
50 % 60 77 747
40 % 159 455 46
30 % 159 455 62
Entity #21 | Chains: U
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 519
95 % 60 74 651 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 74 674
70 % 60 74 721
50 % 77 203 199
40 % 77 204 213
30 % 77 204 232
Entity #22 | Chains: V
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 70 565
95 % 57 70 700 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 57 70 727
70 % 57 70 773
50 % 57 70 840
40 % 57 70 867
30 % 57 70 862
Entity #23 | Chains: W
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 74 520
95 % 60 74 652 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 60 74 675
70 % 60 74 722
50 % 60 74 783
40 % 156 415 52
30 % 159 441 66
Entity #24 | Chains: X
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 600
95 % 60 68 738 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 68 763
70 % 60 68 812
50 % 60 68 867
40 % 60 70 871
30 % 60 71 853
Entity #25 | Chains: Y
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 607
95 % 60 68 747 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 60 68 773
70 % 60 68 821
50 % 60 68 875
40 % 60 68 900
30 % 60 70 867
Entity #26 | Chains: Z
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 63 675
95 % 56 63 831 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 56 63 859
70 % 56 63 898
50 % 56 63 945
40 % 56 63 964
30 % 56 63 954
Entity #27 | Chains: 1
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 2697
95 % 17 21 3027 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 17 21 3076
70 % 17 21 3026
50 % 23 30 2099
40 % 40 146 286
30 % 42 150 294
Entity #28 | Chains: 2
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 609
95 % 60 68 731 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 60 68 757
70 % 60 68 805
50 % 60 69 850
40 % 60 69 882
30 % 60 69 870
Entity #29 | Chains: 3
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 67 622
95 % 60 68 736 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 60 68 761
70 % 60 68 810
50 % 77 189 206
40 % 77 189 228
30 % 77 189 248
Entity #3 | Chains: C
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 2717
95 % 60 68 744 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 60 68 769
70 % 60 68 817
50 % 77 187 208
40 % 77 187 231
30 % 77 187 250
Entity #30 | Chains: 4
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 591
95 % 60 68 727 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 60 68 754
70 % 60 68 801
50 % 60 68 861
40 % 77 184 234
30 % 77 184 252
Entity #4 | Chains: D
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 67 617
95 % 60 74 657 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 60 74 680
70 % 60 74 725
50 % 60 74 787
40 % 77 202 216
30 % 77 202 234
Entity #5 | Chains: E
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 51 851
95 % 60 74 648 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 60 74 672
70 % 60 74 717
50 % 60 74 778
40 % 60 76 794
30 % 61 78 772
Entity #6 | Chains: F
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 74 521
95 % 60 74 655
90 % 60 74 679
70 % 60 74 724
50 % 60 74 786
40 % 78 196 221
30 % 78 196 239
Entity #7 | Chains: G
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 68 605
95 % 60 68 745
90 % 60 68 770
70 % 60 68 818
50 % 60 68 872
40 % 77 194 224
30 % 177 579 38
Entity #8 | Chains: H
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 2716
95 % 17 21 3045 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 60 68 753
70 % 60 68 800
50 % 85 107 387
40 % 93 128 304
30 % 124 269 156
Entity #9 | Chains: I
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 64 654
95 % 57 64 795 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 57 64 824
70 % 57 64 866
50 % 57 64 922
40 % 57 64 940
30 % 57 64 932

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures