Sequence Similarity Clusters for the Entities in PDB 1K83

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 115 230
95 % 15 115 322 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.6
PDBFlex
90 % 15 115 341
70 % 16 120 357
50 % 16 132 369
40 % 16 132 394
30 % 16 132 399
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 138 185
95 % 16 138 245 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 16 138 260
70 % 16 138 290
50 % 17 143 313
40 % 17 143 331
30 % 17 143 338
Entity #11 | Chains: M
ALPHA AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 116 226
95 % 15 117 314 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.3
PDBFlex
90 % 15 117 331
70 % 16 124 342
50 % 16 134 357
40 % 16 142 327
30 % 16 145 331
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 112 233
95 % 14 112 328 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 14 112 347
70 % 14 112 380
50 % 14 114 441
40 % 14 114 473
30 % 14 114 472
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 143 173
95 % 18 143 233 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 18 143 248
70 % 19 148 272
50 % 19 150 291
40 % 19 160 286
30 % 19 160 293
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 137 188
95 % 16 137 248 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 16 137 263
70 % 16 137 294
50 % 17 155 279
40 % 17 155 298
30 % 17 155 309
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 142 175
95 % 17 143 234 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 17 143 249
70 % 17 143 281
50 % 18 148 299
40 % 18 148 314
30 % 18 161 292
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 116 228
95 % 15 116 321 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.9
PDBFlex
90 % 15 116 340
70 % 16 121 356
50 % 16 123 407
40 % 16 123 437
30 % 16 126 427
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 142 176
95 % 17 142 236 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 17 142 250
70 % 18 159 251
50 % 18 167 247
40 % 18 167 266
30 % 18 167 272
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 117 224
95 % 15 117 316
90 % 15 117 334
70 % 15 117 370
50 % 16 122 416
40 % 16 124 435
30 % 16 124 436

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.