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Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin
Sequence Clustering and Redundancy Reduction Results
1K83
Sequence Clusters for the Sequence Entities in PDB 1K83
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 96 203
95% 14 96 287
90% 14 96 300
70% 14 96 316
50% 14 97 338
40% 14 97 361
30% 14 97 374
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 101 186
95% 16 101 267
90% 16 101 278
70% 16 101 295
50% 16 101 327
40% 16 101 351
30% 16 101 362
Entity #11: Chains: M - ALPHA AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 97 201
95% 14 98 279
90% 14 98 292
70% 14 98 309
50% 14 99 331
40% 14 107 301
30% 14 107 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 96 205
95% 14 96 288
90% 14 96 301
70% 14 96 318
50% 14 97 341
40% 14 97 363
30% 14 97 376
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 103 175
95% 17 103 249
90% 17 103 260
70% 17 103 286
50% 17 104 301
40% 17 104 328
30% 17 104 339
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 100 188
95% 16 100 271
90% 16 100 282
70% 16 100 301
50% 16 102 316
40% 16 102 339
30% 16 102 350
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 179
95% 16 103 250
90% 16 103 262
70% 16 103 287
50% 16 103 317
40% 16 103 340
30% 16 105 336
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 97 202
95% 14 97 286
90% 14 97 299
70% 14 97 315
50% 14 98 335
40% 14 98 358
30% 14 98 371
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 181
95% 16 102 259
90% 16 102 269
70% 16 103 279
50% 16 103 311
40% 16 111 294
30% 16 111 311
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 98 200
95% 14 98 282
90% 14 98 295
70% 14 98 311
50% 14 98 347
40% 14 99 356
30% 14 99 367
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.