Sequence Similarity Clusters for the Entities in PDB 1K83

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 113 203
95 % 15 113 285
90 % 15 113 299
70 % 15 113 323
50 % 15 123 315
40 % 15 123 343
30 % 15 123 353
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 119 165
95 % 16 119 235
90 % 16 119 245
70 % 16 119 280
50 % 16 119 314
40 % 16 119 342
30 % 16 119 352
Entity #11 | Chains: M
ALPHA AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 114 201
95 % 15 115 278
90 % 15 115 291
70 % 15 115 317
50 % 15 125 308
40 % 15 133 294
30 % 15 136 302
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 110 207
95 % 14 110 294
90 % 14 110 308
70 % 14 110 330
50 % 14 111 349
40 % 14 111 381
30 % 14 111 387
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 124 152
95 % 18 124 214
90 % 18 124 225
70 % 18 124 258
50 % 18 125 294
40 % 18 134 293
30 % 18 134 313
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 118 168
95 % 16 118 240
90 % 16 118 251
70 % 16 118 284
50 % 16 129 280
40 % 16 129 307
30 % 16 129 328
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 123 158
95 % 17 124 218
90 % 17 124 228
70 % 17 124 262
50 % 17 124 305
40 % 17 124 327
30 % 17 135 308
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 114 202
95 % 15 114 284
90 % 15 114 298
70 % 15 114 322
50 % 15 115 340
40 % 15 115 369
30 % 15 118 371
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 123 159
95 % 17 123 224
90 % 17 123 235
70 % 17 133 214
50 % 17 141 242
40 % 17 141 268
30 % 17 141 283
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 200
95 % 15 115 282
90 % 15 115 295
70 % 15 115 320
50 % 15 115 344
40 % 15 116 364
30 % 15 116 375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.