Sequence Similarity Clusters for the Entities in PDB 1K83

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 113 205
95 % 15 113 287
90 % 15 113 301
70 % 15 113 324
50 % 15 123 322
40 % 15 123 349
30 % 15 123 358
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 119 184
95 % 16 119 251
90 % 16 119 260
70 % 16 119 296
50 % 16 119 321
40 % 16 119 348
30 % 16 119 357
Entity #11 | Chains: M
ALPHA AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 114 202
95 % 15 115 280
90 % 15 115 293
70 % 15 115 318
50 % 15 125 315
40 % 15 133 298
30 % 15 136 304
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 110 209
95 % 14 110 295
90 % 14 110 310
70 % 14 110 331
50 % 14 111 354
40 % 14 111 385
30 % 14 111 391
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 124 168
95 % 18 124 235
90 % 18 124 246
70 % 18 124 276
50 % 18 125 303
40 % 18 134 296
30 % 18 134 317
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 118 187
95 % 16 118 256
90 % 16 118 266
70 % 16 118 300
50 % 16 129 290
40 % 16 129 314
30 % 16 129 331
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 123 172
95 % 17 124 239
90 % 17 124 249
70 % 17 124 280
50 % 17 124 313
40 % 17 124 333
30 % 17 135 310
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 114 204
95 % 15 114 286
90 % 15 114 300
70 % 15 114 323
50 % 15 115 342
40 % 15 115 371
30 % 15 118 374
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 123 174
95 % 17 123 244
90 % 17 123 254
70 % 17 133 242
50 % 17 141 247
40 % 17 141 271
30 % 17 141 286
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 201
95 % 15 115 284
90 % 15 115 297
70 % 15 115 322
50 % 15 115 348
40 % 15 116 367
30 % 15 116 377

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.