Sequence Similarity Clusters for the Entities in PDB 1K83

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 114 206
95 % 15 114 291
90 % 15 114 304
70 % 15 114 329
50 % 15 124 328
40 % 15 124 354
30 % 15 124 361
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 121 181
95 % 16 121 251
90 % 16 121 259
70 % 16 121 297
50 % 16 121 324
40 % 16 121 348
30 % 16 121 354
Entity #11 | Chains: M
ALPHA AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 203
95 % 15 116 284
90 % 15 116 295
70 % 15 116 321
50 % 15 126 322
40 % 15 134 310
30 % 15 137 311
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 111 209
95 % 14 111 299
90 % 14 111 314
70 % 14 111 335
50 % 14 112 360
40 % 14 112 396
30 % 14 112 396
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 126 169
95 % 18 126 234
90 % 18 126 244
70 % 18 126 274
50 % 18 127 307
40 % 18 136 303
30 % 18 136 319
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 120 184
95 % 16 120 254
90 % 16 120 262
70 % 16 120 299
50 % 16 131 293
40 % 16 131 316
30 % 16 131 332
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 125 173
95 % 17 126 235
90 % 17 126 245
70 % 17 126 277
50 % 17 126 314
40 % 17 126 336
30 % 17 137 314
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 205
95 % 15 115 290
90 % 15 115 303
70 % 15 115 328
50 % 15 116 350
40 % 15 116 382
30 % 15 119 378
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 125 174
95 % 17 125 238
90 % 17 125 248
70 % 17 135 258
50 % 17 143 253
40 % 17 143 272
30 % 17 143 288
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 116 202
95 % 15 116 287
90 % 15 116 299
70 % 15 116 324
50 % 15 116 353
40 % 15 117 378
30 % 15 117 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.