Sequence Similarity Clusters for the Entities in PDB 1K83

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 114 212
95 % 15 114 299
90 % 15 114 313
70 % 15 114 342
50 % 15 124 339
40 % 15 124 369
30 % 15 124 373
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 127 177
95 % 16 127 247
90 % 16 127 255
70 % 16 127 286
50 % 16 127 320
40 % 16 127 343
30 % 16 127 352
Entity #11 | Chains: M
ALPHA AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 209
95 % 15 116 289
90 % 15 116 301
70 % 15 116 332
50 % 15 126 334
40 % 15 134 323
30 % 15 137 326
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 111 214
95 % 14 111 308
90 % 14 111 322
70 % 14 111 351
50 % 14 112 404
40 % 14 112 441
30 % 14 112 434
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 132 169
95 % 18 132 232
90 % 18 132 243
70 % 18 132 278
50 % 18 133 304
40 % 18 142 302
30 % 18 142 312
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 126 178
95 % 16 126 249
90 % 16 126 257
70 % 16 126 289
50 % 16 137 298
40 % 16 137 315
30 % 16 137 329
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 131 172
95 % 17 132 235
90 % 17 132 246
70 % 17 132 279
50 % 17 132 309
40 % 17 132 333
30 % 17 143 310
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 210
95 % 15 115 298
90 % 15 115 311
70 % 15 115 341
50 % 15 116 385
40 % 15 116 420
30 % 15 119 399
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 131 173
95 % 17 131 237
90 % 17 131 247
70 % 17 141 263
50 % 17 149 258
40 % 17 149 280
30 % 17 149 289
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 116 208
95 % 15 116 294
90 % 15 116 307
70 % 15 116 337
50 % 15 116 392
40 % 15 117 410
30 % 15 117 409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.