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Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin
Sequence Clustering and Redundancy Reduction Results
1K83
Sequence Clusters for the Sequence Entities in PDB 1K83
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 96 203
95% 14 96 287
90% 14 96 302
70% 14 96 319
50% 14 97 343
40% 14 97 365
30% 14 97 379
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 101 188
95% 16 101 269
90% 16 101 281
70% 16 101 298
50% 16 101 331
40% 16 101 354
30% 16 101 365
Entity #11: Chains: M - ALPHA AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 97 201
95% 14 98 280
90% 14 98 295
70% 14 98 312
50% 14 99 336
40% 14 108 300
30% 14 108 317
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 96 205
95% 14 96 288
90% 14 96 303
70% 14 96 320
50% 14 97 346
40% 14 97 367
30% 14 97 381
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 103 179
95% 17 103 252
90% 17 103 264
70% 17 103 289
50% 17 104 304
40% 17 104 330
30% 17 104 341
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 100 190
95% 16 100 273
90% 16 100 285
70% 16 100 304
50% 16 102 319
40% 16 102 341
30% 16 102 353
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 183
95% 16 103 253
90% 16 103 266
70% 16 103 290
50% 16 103 320
40% 16 103 342
30% 16 105 337
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 97 202
95% 14 97 286
90% 14 97 301
70% 14 97 318
50% 14 98 341
40% 14 98 363
30% 14 98 376
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 184
95% 16 102 262
90% 16 102 274
70% 16 103 282
50% 16 112 267
40% 16 112 293
30% 16 112 309
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 98 200
95% 14 98 283
90% 14 98 298
70% 14 98 314
50% 14 98 352
40% 14 99 361
30% 14 99 372
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.