Sequence Similarity Clusters for the Entities in PDB 1K83

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 114 209
95 % 15 114 296
90 % 15 114 308
70 % 15 114 336
50 % 15 124 332
40 % 15 124 359
30 % 15 124 366
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 124 180
95 % 16 124 249
90 % 16 124 256
70 % 16 124 292
50 % 16 124 323
40 % 16 124 345
30 % 16 124 352
Entity #11 | Chains: M
ALPHA AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 205
95 % 15 116 286
90 % 15 116 297
70 % 15 116 326
50 % 15 126 328
40 % 15 134 317
30 % 15 137 321
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 111 211
95 % 14 111 305
90 % 14 111 318
70 % 14 111 344
50 % 14 112 388
40 % 14 112 427
30 % 14 112 419
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 129 170
95 % 18 129 233
90 % 18 129 242
70 % 18 129 275
50 % 18 130 304
40 % 18 139 306
30 % 18 139 315
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 123 182
95 % 16 123 254
90 % 16 123 262
70 % 16 123 297
50 % 16 134 297
40 % 16 134 320
30 % 16 134 332
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 128 173
95 % 17 129 236
90 % 17 129 245
70 % 17 129 277
50 % 17 129 312
40 % 17 129 333
30 % 17 140 311
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 207
95 % 15 115 295
90 % 15 115 307
70 % 15 115 335
50 % 15 116 365
40 % 15 116 401
30 % 15 119 386
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 128 174
95 % 17 128 239
90 % 17 128 249
70 % 17 138 263
50 % 17 146 259
40 % 17 146 279
30 % 17 146 289
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 116 204
95 % 15 116 291
90 % 15 116 303
70 % 15 116 330
50 % 15 116 369
40 % 15 117 393
30 % 15 117 393

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.