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An Information Portal to 105097 Biological Macromolecular Structures

Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin
Sequence Clustering and Redundancy Reduction Results
1K83
Sequence Clusters for the Sequence Entities in PDB 1K83
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 96 208
95% 14 96 292
90% 14 96 309
70% 14 96 326
50% 14 97 351
40% 14 97 376
30% 14 97 387
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 101 192
95% 16 101 274
90% 16 101 287
70% 16 101 304
50% 16 101 341
40% 16 101 366
30% 16 101 376
Entity #11: Chains: M - ALPHA AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 97 205
95% 14 98 284
90% 14 98 300
70% 14 98 317
50% 14 99 344
40% 14 107 316
30% 14 107 328
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 96 210
95% 14 96 294
90% 14 96 311
70% 14 96 327
50% 14 97 354
40% 14 97 379
30% 14 97 389
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 103 184
95% 17 103 263
90% 17 103 275
70% 17 103 298
50% 17 104 322
40% 17 104 346
30% 17 104 355
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 100 194
95% 16 100 278
90% 16 100 291
70% 16 100 310
50% 16 102 332
40% 16 102 356
30% 16 102 368
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 187
95% 16 103 265
90% 16 103 277
70% 16 103 299
50% 16 103 333
40% 16 103 357
30% 16 105 350
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 97 206
95% 14 97 290
90% 14 97 307
70% 14 97 323
50% 14 98 350
40% 14 98 375
30% 14 98 386
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 190
95% 16 102 269
90% 16 102 281
70% 16 103 295
50% 16 111 276
40% 16 111 305
30% 16 111 318
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 98 204
95% 14 98 287
90% 14 98 304
70% 14 98 319
50% 14 98 360
40% 14 99 372
30% 14 99 381
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.