Sequence Similarity Clusters for the Entities in PDB 1K83

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 114 216
95 % 15 114 308
90 % 15 114 324
70 % 15 114 360
50 % 15 125 367
40 % 15 125 397
30 % 15 125 400
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 128 182
95 % 16 128 251
90 % 16 128 261
70 % 16 128 293
50 % 16 128 331
40 % 16 128 355
30 % 16 128 365
Entity #11 | Chains: M
ALPHA AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 214
95 % 15 116 298
90 % 15 116 313
70 % 15 116 350
50 % 15 127 358
40 % 15 135 326
30 % 15 138 328
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 111 220
95 % 14 111 315
90 % 14 111 332
70 % 14 111 371
50 % 14 113 419
40 % 14 113 454
30 % 14 113 449
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 133 174
95 % 18 133 236
90 % 18 133 249
70 % 18 133 282
50 % 18 135 307
40 % 18 144 306
30 % 18 144 320
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 127 183
95 % 16 127 253
90 % 16 127 262
70 % 16 127 295
50 % 16 139 300
40 % 16 139 319
30 % 16 139 327
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 132 176
95 % 17 133 237
90 % 17 133 250
70 % 17 133 283
50 % 17 133 315
40 % 17 133 335
30 % 17 145 318
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 115 215
95 % 15 115 307
90 % 15 115 322
70 % 15 115 358
50 % 15 117 404
40 % 15 117 435
30 % 15 120 427
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 132 177
95 % 17 132 242
90 % 17 132 253
70 % 17 143 266
50 % 17 151 259
40 % 17 151 281
30 % 17 151 289
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 116 213
95 % 15 116 304
90 % 15 116 319
70 % 15 116 355
50 % 15 116 412
40 % 15 118 430
30 % 15 118 433

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.