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An Information Portal to 110790 Biological Macromolecular Structures

Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin
Sequence Clustering and Redundancy Reduction Results
1K83
Sequence Clusters for the Sequence Entities in PDB 1K83
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 103 205
95% 14 103 288
90% 14 103 301
70% 14 103 323
50% 14 104 347
40% 14 104 378
30% 14 104 381
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 191
95% 16 108 266
90% 16 108 280
70% 16 108 300
50% 16 108 328
40% 16 108 362
30% 16 108 365
Entity #11: Chains: M - ALPHA AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 104 202
95% 14 105 284
90% 14 105 295
70% 14 105 318
50% 14 106 334
40% 14 114 320
30% 14 114 329
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 103 206
95% 14 103 289
90% 14 103 302
70% 14 103 324
50% 14 104 349
40% 14 104 380
30% 14 104 384
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 110 184
95% 17 110 256
90% 17 110 268
70% 17 110 292
50% 17 111 310
40% 17 111 344
30% 17 111 353
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 107 192
95% 16 107 272
90% 16 107 285
70% 16 107 305
50% 16 109 317
40% 16 109 349
30% 16 109 358
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 188
95% 16 110 257
90% 16 110 269
70% 16 110 293
50% 16 110 318
40% 16 110 350
30% 16 112 350
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 104 204
95% 14 104 287
90% 14 104 300
70% 14 104 322
50% 14 105 343
40% 14 105 375
30% 14 105 379
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 189
95% 16 109 263
90% 16 109 276
70% 16 110 290
50% 16 118 274
40% 16 118 310
30% 16 118 320
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 105 201
95% 14 105 286
90% 14 105 296
70% 14 105 319
50% 14 105 350
40% 14 106 368
30% 14 106 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.