POP-OUT | CLOSE
 
Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin
Sequence Clustering and Redundancy Reduction Results
1K83
Sequence Clusters for the Sequence Entities in PDB 1K83
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 96 203
95% 14 96 287
90% 14 96 300
70% 14 96 316
50% 14 97 340
40% 14 97 363
30% 14 97 377
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 101 186
95% 16 101 268
90% 16 101 279
70% 16 101 296
50% 16 101 328
40% 16 101 352
30% 16 101 363
Entity #11: Chains: M - ALPHA AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 97 201
95% 14 98 280
90% 14 98 293
70% 14 98 310
50% 14 99 333
40% 14 107 302
30% 14 107 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 96 205
95% 14 96 288
90% 14 96 301
70% 14 96 318
50% 14 97 343
40% 14 97 365
30% 14 97 379
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 103 177
95% 17 103 251
90% 17 103 262
70% 17 103 287
50% 17 104 301
40% 17 104 328
30% 17 104 339
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 100 188
95% 16 100 272
90% 16 100 283
70% 16 100 302
50% 16 102 316
40% 16 102 339
30% 16 102 351
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 181
95% 16 103 252
90% 16 103 264
70% 16 103 288
50% 16 103 317
40% 16 103 340
30% 16 105 336
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 97 202
95% 14 97 286
90% 14 97 299
70% 14 97 315
50% 14 98 337
40% 14 98 360
30% 14 98 373
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 182
95% 16 102 261
90% 16 102 272
70% 16 103 280
50% 16 103 311
40% 16 111 295
30% 16 111 312
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 98 200
95% 14 98 283
90% 14 98 296
70% 14 98 312
50% 14 98 349
40% 14 99 358
30% 14 99 369
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.