Sequence Similarity Clusters for the Entities in PDB 1K7D

Entity #1 | Chains: A
Penicillin Acylase alpha subunit protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 20 2479
95 % 9 21 2917 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 21 2964
70 % 9 21 2942
50 % 9 22 2770
40 % 9 22 2733
30 % 9 22 2560
Entity #2 | Chains: B
penicillin Acylase beta subunit protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9956
95 % 12 24 2374 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 24 2436
70 % 12 26 1733
50 % 12 27 1718
40 % 12 29 1624
30 % 12 29 1594

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.