Sequence Similarity Clusters for the Entities in PDB 1K7D

Entity #1 | Chains: A
Penicillin Acylase alpha subunit protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 2393
95 % 9 21 2831
90 % 9 21 2880
70 % 9 21 2857
50 % 9 22 2697
40 % 9 22 2663
30 % 9 22 2484
Entity #2 | Chains: B
penicillin Acylase beta subunit protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9665
95 % 12 24 2293 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 24 2361
70 % 12 26 1671
50 % 12 27 1669
40 % 12 29 1580
30 % 12 29 1552

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.