Sequence Similarity Clusters for the Entities in PDB 1K7D

Entity #1 | Chains: A
Penicillin Acylase alpha subunit protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 2446
95 % 9 21 2875
90 % 9 21 2922
70 % 9 21 2899
50 % 9 22 2736
40 % 9 22 2694
30 % 9 22 2524
Entity #2 | Chains: B
penicillin Acylase beta subunit protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9820
95 % 12 24 2346 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 12 24 2410
70 % 12 26 1705
50 % 12 27 1693
40 % 12 29 1597
30 % 12 29 1571

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.