Sequence Similarity Clusters for the Entities in PDB 1K78

Entity #1 | Chains: C,G
Pax5/Ets Binding Site on the mb-1 promoter dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
Pax5/Ets Binding Site on the mb-1 promoter dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I
Paired Box Protein Pax5 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22722
95 % 1 2 19588 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 19074
70 % 1 2 17613
50 % 1 2 15296
40 % 1 2 13613
30 % 1 2 11651
Entity #4 | Chains: B,F
C-ets-1 Protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 9761
95 % 2 5 9850 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 5 9732
70 % 2 5 9255
50 % 3 6 7117
40 % 3 6 6616
30 % 3 6 5902

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.