Sequence Similarity Clusters for the Entities in PDB 1K78

Entity #1 | Chains: C,G
Pax5/Ets Binding Site on the mb-1 promoter dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
Pax5/Ets Binding Site on the mb-1 promoter dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I
Paired Box Protein Pax5 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22076
95 % 1 2 19028 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18526
70 % 1 2 17142
50 % 1 2 14915
40 % 1 2 13279
30 % 1 2 11358
Entity #4 | Chains: B,F
C-ets-1 Protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 9510
95 % 2 5 9598 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 5 9492
70 % 2 5 9023
50 % 3 6 6912
40 % 3 6 6429
30 % 3 6 5734

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.