Sequence Similarity Clusters for the Entities in PDB 1K78

Entity #1 | Chains: C,G
Pax5/Ets Binding Site on the mb-1 promoter dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
Pax5/Ets Binding Site on the mb-1 promoter dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I
Paired Box Protein Pax5 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 20691
95 % 1 2 17862
90 % 1 2 17404
70 % 1 2 16132
50 % 1 2 14090
40 % 1 2 12555
30 % 1 2 10749
Entity #4 | Chains: B,F
C-ets-1 Protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 8882
95 % 2 5 8978
90 % 2 5 8878
70 % 2 5 8455
50 % 3 6 6517
40 % 3 6 6079
30 % 3 6 5428

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.