Sequence Similarity Clusters for the Entities in PDB 1K78

Entity #1 | Chains: C,G
Pax5/Ets Binding Site on the mb-1 promoter dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
Pax5/Ets Binding Site on the mb-1 promoter dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I
Paired Box Protein Pax5 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21358
95 % 1 2 19221 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18702
70 % 1 2 17221
50 % 1 2 15014
40 % 1 2 13352
30 % 1 2 11225
Entity #4 | Chains: B,F
C-ets-1 Protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 8788
95 % 2 5 8783 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 5 8708
70 % 2 5 8395
50 % 11 17 1987
40 % 11 17 1968
30 % 11 17 1873

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures