Sequence Similarity Clusters for the Entities in PDB 1K6Q

Entity #1 | Chains: L
immunoglobulin Fab D3, light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52584
95 % 1 3 17810 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 13 27 2155
70 % 1306 2553 1
50 % 2676 5180 1
40 % 3059 5834 1
30 % 3754 7269 1
Entity #2 | Chains: H
immunoglobulin Fab D3, heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52585
95 % 1 3 20814 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 13 19 1811
70 % 1298 2511 2
50 % 2677 5180 1
40 % 3060 5834 1
30 % 3755 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures