Sequence Similarity Clusters for the Entities in PDB 1K6Q

Entity #1 | Chains: L
immunoglobulin Fab D3, light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61100
95 % 1 3 18511 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 12 26 2133
70 % 1184 2329 1
50 % 2421 4717 1
40 % 2421 4717 1
30 % 2771 5571 1
Entity #2 | Chains: H
immunoglobulin Fab D3, heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60476
95 % 1 3 18455 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 12 18 1827
70 % 1175 2282 2
50 % 2422 4717 1
40 % 2422 4717 1
30 % 2772 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.