Sequence Similarity Clusters for the Entities in PDB 1K6Q

Entity #1 | Chains: L
immunoglobulin Fab D3, light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62325
95 % 1 3 18913 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 12 26 2198
70 % 1246 2426 1
50 % 2546 4913 1
40 % 2546 4913 1
30 % 2906 5780 1
Entity #2 | Chains: H
immunoglobulin Fab D3, heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61688
95 % 1 3 18855 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 13 19 1750
70 % 1235 2376 2
50 % 2547 4913 1
40 % 2547 4913 1
30 % 2907 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures