Sequence Similarity Clusters for the Entities in PDB 1K6Q

Entity #1 | Chains: L
immunoglobulin Fab D3, light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63053
95 % 1 3 19172 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 12 26 2233
70 % 1274 2474 1
50 % 2603 5011 1
40 % 2603 5011 1
30 % 3009 5941 1
Entity #2 | Chains: H
immunoglobulin Fab D3, heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62407
95 % 1 3 19111 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 13 19 1787
70 % 1263 2424 2
50 % 2604 5011 1
40 % 2604 5011 1
30 % 3010 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures