Sequence Similarity Clusters for the Entities in PDB 1K6O

Entity #1 | Chains: D
5'-D(*CP*AP*CP*AP*GP*GP*AP*TP*GP*TP*CP*CP*AP*TP*AP*TP*TP*AP*GP*GP*AP*CP*A)-3' dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*TP*GP*TP*CP*CP*TP*AP*AP*TP*AP*TP*GP*GP*AP*CP*AP*TP*CP*CP*TP*GP*TP*G)-3' dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
ETS-domain protein ELK-4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29217
95 % 3 3 24221
90 % 3 3 23448
70 % 4 4 13601
50 % 11 11 2791
40 % 11 11 2751
30 % 11 11 2576
Entity #4 | Chains: B,C
Serum response factor protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46296
95 % 1 1 34620
90 % 1 1 33096
70 % 1 1 29481
50 % 1 1 25187
40 % 1 1 22190
30 % 1 1 18778

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.