Sequence Similarity Clusters for the Entities in PDB 1K6N

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 90 344
95 % 84 97 387 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 84 97 412
70 % 84 97 453
50 % 105 131 392
40 % 105 131 421
30 % 105 131 418
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 5452
95 % 84 97 390 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 84 97 414
70 % 84 97 456
50 % 105 131 394
40 % 105 131 422
30 % 105 131 419
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 83 96 311
95 % 84 97 395 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 84 97 421
70 % 84 97 459
50 % 84 97 516
40 % 105 131 423
30 % 105 131 421

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures