Sequence Similarity Clusters for the Entities in PDB 1K6L

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 439
95 % 80 97 355 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 80 97 379
70 % 80 97 415
50 % 100 129 356
40 % 100 129 380
30 % 100 129 379
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 62 490
95 % 80 97 354 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 80 97 378
70 % 80 97 413
50 % 100 129 355
40 % 100 129 379
30 % 100 129 378
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 96 259
95 % 80 97 356 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 80 97 380
70 % 80 97 416
50 % 80 97 496
40 % 100 129 381
30 % 100 129 380

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.