Sequence Similarity Clusters for the Entities in PDB 1K6L

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 420
95 % 80 97 344 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 80 97 370
70 % 80 97 407
50 % 97 126 348
40 % 97 126 374
30 % 97 126 382
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 62 466
95 % 80 97 343
90 % 80 97 369
70 % 80 97 405
50 % 97 126 347
40 % 97 126 373
30 % 97 126 380
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 96 248
95 % 80 97 345 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 80 97 371
70 % 80 97 408
50 % 80 97 481
40 % 97 126 375
30 % 97 126 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.