Sequence Similarity Clusters for the Entities in PDB 1K6L

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 68 448
95 % 80 97 364 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 80 97 391
70 % 80 97 430
50 % 100 129 379
40 % 100 129 402
30 % 100 129 404
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 62 503
95 % 80 97 363 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 80 97 390
70 % 80 97 428
50 % 100 129 378
40 % 100 129 401
30 % 100 129 403
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 96 270
95 % 80 97 365 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 80 97 392
70 % 80 97 431
50 % 80 97 503
40 % 100 129 403
30 % 100 129 405

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures