Sequence Similarity Clusters for the Entities in PDB 1K5N

Entity #1 | Chains: A
major histocompatibility complex molecule HLA-B*2709 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5538
95 % 1 34 1470 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 1 196 139
70 % 1 684 6
50 % 1 689 6
40 % 1 739 10
30 % 1 856 15
Entity #2 | Chains: B
beta-2-microglobulin, light chain protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 593 2
95 % 1 636 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 1 645 4
70 % 1 875 4
50 % 1 897 4
40 % 1 897 9
30 % 1 897 14
Entity #3 | Chains: C
nonameric model peptide m9 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.