Sequence Similarity Clusters for the Entities in PDB 1K5N

Entity #1 | Chains: A
major histocompatibility complex molecule HLA-B*2709 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5620
95 % 1 34 1492 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 1 200 132
70 % 1 705 6
50 % 1 710 6
40 % 1 761 10
30 % 1 881 15
Entity #2 | Chains: B
beta-2-microglobulin, light chain protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 607 2
95 % 1 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 1 660 4
70 % 1 898 4
50 % 1 920 3
40 % 1 920 8
30 % 1 920 12
Entity #3 | Chains: C
nonameric model peptide m9 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.