Sequence Similarity Clusters for the Entities in PDB 1K5M

Entity #1 | Chains: A
COAT PROTEIN VP1 (P1D) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1985
95 % 3 32 1592
90 % 3 32 1626
70 % 3 33 1592
50 % 3 33 1646
40 % 21 148 273
30 % 21 148 275
Entity #2 | Chains: B
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53499
95 % 1 1 38102
90 % 3 32 1629
70 % 3 33 1593
50 % 20 150 288
40 % 20 150 308
30 % 29 178 165
Entity #3 | Chains: C
COAT PROTEIN VP3 (P1C) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 32 1160
95 % 3 32 1608
90 % 3 32 1640
70 % 3 33 1601
50 % 14 114 422
40 % 21 159 255
30 % 30 189 149
Entity #4 | Chains: D
COAT PROTEIN VP4 (P1A) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 32 1192
95 % 3 33 1549
90 % 3 33 1583
70 % 11 82 552
50 % 19 116 417
40 % 19 116 456
30 % 19 116 448

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.