Sequence Similarity Clusters for the Entities in PDB 1K5M

Entity #1 | Chains: A
COAT PROTEIN VP1 (P1D) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 26 1741
95 % 3 36 1533 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 3 36 1568
70 % 3 37 1501
50 % 3 37 1556
40 % 21 160 278
30 % 21 160 289
Entity #2 | Chains: B
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58115
95 % 1 1 41394
90 % 3 36 1574
70 % 3 37 1503
50 % 20 160 318
40 % 20 160 331
30 % 31 195 167
Entity #3 | Chains: C
COAT PROTEIN VP3 (P1C) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 1146
95 % 3 36 1545 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 3 36 1580
70 % 3 37 1506
50 % 21 169 247
40 % 21 171 261
30 % 32 210 149
Entity #4 | Chains: D
COAT PROTEIN VP4 (P1A) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 35 1206
95 % 3 36 1573
90 % 3 36 1608
70 % 11 87 578
50 % 19 122 445
40 % 19 123 470
30 % 19 123 464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures