Sequence Similarity Clusters for the Entities in PDB 1K5M

Entity #1 | Chains: A
COAT PROTEIN VP1 (P1D) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 1966
95 % 3 32 1570
90 % 3 32 1606
70 % 3 33 1576
50 % 3 33 1632
40 % 21 147 270
30 % 21 147 275
Entity #2 | Chains: B
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53002
95 % 1 1 37709
90 % 3 32 1609
70 % 3 33 1577
50 % 20 150 286
40 % 20 150 304
30 % 29 178 163
Entity #3 | Chains: C
COAT PROTEIN VP3 (P1C) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 32 1141
95 % 3 32 1586
90 % 3 32 1620
70 % 3 33 1585
50 % 14 114 414
40 % 21 158 253
30 % 30 188 148
Entity #4 | Chains: D
COAT PROTEIN VP4 (P1A) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 32 1175
95 % 3 33 1532
90 % 3 33 1568
70 % 11 82 532
50 % 19 116 409
40 % 19 116 445
30 % 19 116 439

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.