Sequence Similarity Clusters for the Entities in PDB 1K5M

Entity #1 | Chains: A
COAT PROTEIN VP1 (P1D) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 26 1781
95 % 3 36 1552 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 3 36 1584
70 % 3 37 1522
50 % 3 37 1583
40 % 21 160 279
30 % 21 160 293
Entity #2 | Chains: B
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58867
95 % 1 1 41906
90 % 3 36 1591
70 % 3 37 1524
50 % 20 160 338
40 % 20 160 353
30 % 31 195 169
Entity #3 | Chains: C
COAT PROTEIN VP3 (P1C) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 1166
95 % 3 36 1565 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 3 36 1597
70 % 3 37 1526
50 % 21 169 247
40 % 21 171 262
30 % 32 210 153
Entity #4 | Chains: D
COAT PROTEIN VP4 (P1A) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 35 1222
95 % 3 36 1593
90 % 3 36 1624
70 % 11 87 591
50 % 19 122 452
40 % 19 123 477
30 % 19 123 470

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures