Sequence Similarity Clusters for the Entities in PDB 1K5M

Entity #1 | Chains: A
COAT PROTEIN VP1 (P1D) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 26 1668
95 % 3 36 1473
90 % 3 36 1503
70 % 3 37 1446
50 % 3 37 1506
40 % 21 155 276
30 % 21 155 284
Entity #2 | Chains: B
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56266
95 % 1 1 40101
90 % 3 36 1509
70 % 3 37 1447
50 % 20 157 298
40 % 20 157 313
30 % 30 192 165
Entity #3 | Chains: C
COAT PROTEIN VP3 (P1C) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 36 1093
95 % 3 36 1484
90 % 3 36 1514
70 % 3 37 1449
50 % 21 164 242
40 % 21 166 260
30 % 31 205 146
Entity #4 | Chains: D
COAT PROTEIN VP4 (P1A) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 35 1144
95 % 3 36 1510
90 % 3 36 1541
70 % 11 87 554
50 % 19 122 427
40 % 19 123 454
30 % 19 123 453

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.