Sequence Similarity Clusters for the Entities in PDB 1K5M

Entity #1 | Chains: A
COAT PROTEIN VP1 (P1D) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 22 2041
95 % 3 32 1620
90 % 3 32 1654
70 % 3 33 1626
50 % 3 33 1682
40 % 21 148 283
30 % 21 148 287
Entity #2 | Chains: B
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54611
95 % 1 1 38887
90 % 3 32 1658
70 % 3 33 1627
50 % 20 150 302
40 % 20 150 318
30 % 29 178 170
Entity #3 | Chains: C
COAT PROTEIN VP3 (P1C) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 32 1197
95 % 3 32 1638
90 % 3 32 1670
70 % 3 33 1635
50 % 14 114 433
40 % 21 159 263
30 % 30 189 154
Entity #4 | Chains: D
COAT PROTEIN VP4 (P1A) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 32 1236
95 % 3 33 1578
90 % 3 33 1613
70 % 11 82 578
50 % 19 116 431
40 % 19 116 470
30 % 19 116 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.