Sequence Similarity Clusters for the Entities in PDB 1K5M

Entity #1 | Chains: A
COAT PROTEIN VP1 (P1D) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 26 1644
95 % 3 36 1453
90 % 3 36 1481
70 % 3 37 1424
50 % 3 37 1479
40 % 22 155 275
30 % 22 155 282
Entity #2 | Chains: B
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55520
95 % 1 1 39573
90 % 3 36 1486
70 % 3 37 1425
50 % 21 157 294
40 % 21 157 307
30 % 31 192 164
Entity #3 | Chains: C
COAT PROTEIN VP3 (P1C) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 36 1076
95 % 3 36 1463
90 % 3 36 1491
70 % 3 37 1427
50 % 22 164 241
40 % 22 166 257
30 % 32 203 147
Entity #4 | Chains: D
COAT PROTEIN VP4 (P1A) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 35 1126
95 % 3 36 1487
90 % 3 36 1517
70 % 11 87 548
50 % 20 122 421
40 % 20 123 446
30 % 20 123 445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.