Sequence Similarity Clusters for the Entities in PDB 1K5G

Entity #1 | Chains: A,D,G,J
GTP-binding nuclear protein RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 51 517
95 % 68 74 331 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 71 78 336
70 % 73 81 372
50 % 73 81 432
40 % 74 82 451
30 % 738 822 16
Entity #2 | Chains: B,E,H,K
Ran-specific GTPase-activating protein protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9595
95 % 2 2 9728 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 9617
70 % 2 2 9180
50 % 2 2 8303
40 % 2 2 7623
30 % 2 2 6713
Entity #3 | Chains: C,F,I,L
Ran GTPase activating protein 1 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 4926
95 % 4 4 5686 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 4 5710
70 % 4 4 5614
50 % 4 4 5316
40 % 4 4 5010
30 % 4 4 4564

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures