Sequence Similarity Clusters for the Entities in PDB 1K5G

Entity #1 | Chains: A,D,G,J
GTP-binding nuclear protein RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 51 496
95 % 68 74 320 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 71 78 319
70 % 73 81 353
50 % 73 81 409
40 % 74 82 426
30 % 700 782 16
Entity #2 | Chains: B,E,H,K
Ran-specific GTPase-activating protein protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9201
95 % 2 2 9391 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 9284
70 % 2 2 8878
50 % 2 2 8035
40 % 2 2 7376
30 % 2 2 6501
Entity #3 | Chains: C,F,I,L
Ran GTPase activating protein 1 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 4718
95 % 4 4 5482 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 4 5500
70 % 4 4 5422
50 % 4 4 5142
40 % 4 4 4855
30 % 4 4 4421

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.