Sequence Similarity Clusters for the Entities in PDB 1K5D

Entity #1 | Chains: A,D,G,J
GTP-binding nuclear protein RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 51 486
95 % 57 74 305 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.9
PDBFlex
90 % 59 78 304
70 % 61 81 335
50 % 61 81 396
40 % 62 82 414
30 % 613 768 16
Entity #2 | Chains: B,E,H,K
Ran-specific GTPase-activating protein protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 8997
95 % 1 2 9180 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 9087
70 % 1 2 8673
50 % 1 2 7851
40 % 1 2 7212
30 % 1 2 6361
Entity #3 | Chains: C,F,I,L
Ran GTPase activating protein 1 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4572
95 % 3 4 5326 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 4 5340
70 % 3 4 5281
50 % 3 4 5011
40 % 3 4 4733
30 % 3 4 4314

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.