Sequence Similarity Clusters for the Entities in PDB 1K5D

Entity #1 | Chains: A,D,G,J
GTP-binding nuclear protein RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 55 507
95 % 57 74 334 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 59 78 340
70 % 61 81 371
50 % 61 81 438
40 % 62 82 463
30 % 676 837 14
Entity #2 | Chains: B,E,H,K
Ran-specific GTPase-activating protein protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10117
95 % 1 2 9892 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 9766
70 % 1 2 9303
50 % 1 2 8446
40 % 1 2 7701
30 % 1 2 6669
Entity #3 | Chains: C,F,I,L
Ran GTPase activating protein 1 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 5958
95 % 3 4 6176 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 4 6171
70 % 3 4 6013
50 % 3 4 5632
40 % 3 4 5268
30 % 3 4 4663

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures