Sequence Similarity Clusters for the Entities in PDB 1K5D

Entity #1 | Chains: A,D,G,J
GTP-binding nuclear protein RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 40 563
95 % 46 63 310
90 % 47 66 319
70 % 49 69 333
50 % 49 69 375
40 % 50 70 395
30 % 575 717 15
Entity #2 | Chains: B,E,H,K
Ran-specific GTPase-activating protein protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 8365
95 % 1 2 8568
90 % 1 2 8482
70 % 1 2 8108
50 % 1 2 7368
40 % 1 2 6795
30 % 1 2 6000
Entity #3 | Chains: C,F,I,L
Ran GTPase activating protein 1 protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 4234
95 % 3 4 4942
90 % 3 4 4965
70 % 3 4 4912
50 % 3 4 4683
40 % 3 4 4454
30 % 3 4 4062

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.