Sequence Similarity Clusters for the Entities in PDB 1K4T

Entity #1 | Chains: B
5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA topoisomerase I protein, length: 592 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 9823
95 % 1 15 4222 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.5
PDBFlex
90 % 1 15 4251
70 % 1 15 4177
50 % 1 15 4022
40 % 1 15 3847
30 % 1 15 3562

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.