Sequence Similarity Clusters for the Entities in PDB 1K4D

Entity #1 | Chains: A
antibody Fab fragment heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 53 707
95 % 10 53 967 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 53 1002
70 % 1009 2280 2
50 % 2084 4713 1
40 % 2084 4713 1
30 % 2348 5567 1
Entity #2 | Chains: B
antibody Fab fragment light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 53 708
95 % 10 54 945 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.3
PDBFlex
90 % 15 65 750
70 % 1020 2327 1
50 % 2085 4713 1
40 % 2085 4713 1
30 % 2349 5567 1
Entity #3 | Chains: C
potassium channel KcsA protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 2919
95 % 10 55 677 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.9
PDBFlex
90 % 10 55 703
70 % 10 56 701
50 % 10 58 661
40 % 10 58 690
30 % 10 58 684

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.