Sequence Similarity Clusters for the Entities in PDB 1K4D

Entity #1 | Chains: A
antibody Fab fragment heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 53 683
95 % 10 53 942 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 53 975
70 % 978 2197 1
50 % 2017 4537 1
40 % 2017 4537 1
30 % 2266 5342 1
Entity #2 | Chains: B
antibody Fab fragment light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 53 684
95 % 10 54 924 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.3
PDBFlex
90 % 15 65 728
70 % 811 1841 2
50 % 2018 4537 1
40 % 2018 4537 1
30 % 2267 5342 1
Entity #3 | Chains: C
potassium channel KcsA protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 2817
95 % 10 55 649 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.9
PDBFlex
90 % 10 55 675
70 % 10 56 670
50 % 10 58 634
40 % 10 58 663
30 % 10 58 660

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.