Sequence Similarity Clusters for the Entities in PDB 1K4D

Entity #1 | Chains: A
antibody Fab fragment heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 53 697
95 % 10 53 954
90 % 10 53 989
70 % 990 2238 2
50 % 2041 4619 1
40 % 2041 4619 1
30 % 2296 5440 1
Entity #2 | Chains: B
antibody Fab fragment light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 53 698
95 % 10 54 933
90 % 15 65 743
70 % 998 2280 1
50 % 2042 4619 1
40 % 2042 4619 1
30 % 2297 5440 1
Entity #3 | Chains: C
potassium channel KcsA protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 15 2860
95 % 10 55 666
90 % 10 55 692
70 % 10 56 691
50 % 10 58 651
40 % 10 58 681
30 % 10 58 677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.