Sequence Similarity Clusters for the Entities in PDB 1K4D

Entity #1 | Chains: A
antibody Fab fragment heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 53 671
95 % 10 53 926
90 % 10 53 961
70 % 964 2145 1
50 % 1988 4435 1
40 % 1988 4435 1
30 % 2235 5225 1
Entity #2 | Chains: B
antibody Fab fragment light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 53 672
95 % 10 54 911
90 % 15 65 709
70 % 799 1803 2
50 % 1989 4435 1
40 % 1989 4435 1
30 % 2236 5225 1
Entity #3 | Chains: C
potassium channel KcsA protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 15 2769
95 % 10 55 635
90 % 10 55 661
70 % 10 56 652
50 % 10 58 618
40 % 10 58 650
30 % 10 58 653

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.