Sequence Similarity Clusters for the Entities in PDB 1K4C

Entity #1 | Chains: A
antibody Fab fragment heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 53 707
95 % 5 53 967
90 % 5 53 1002
70 % 624 2280 2
50 % 1295 4713 1
40 % 1295 4713 1
30 % 1444 5567 1
Entity #2 | Chains: B
antibody Fab fragment light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 53 708
95 % 5 54 945 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.3
PDBFlex
90 % 8 65 750
70 % 632 2327 1
50 % 1296 4713 1
40 % 1296 4713 1
30 % 1445 5567 1
Entity #3 | Chains: C
potassium channel KcsA protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 2919
95 % 5 55 677 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.9
PDBFlex
90 % 5 55 703
70 % 5 56 701
50 % 5 58 661
40 % 5 58 690
30 % 5 58 684

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.