Sequence Similarity Clusters for the Entities in PDB 1K3Z

Entity #1 | Chains: A,B
Transcription factor p65 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23068
95 % 2 2 19824 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 2 2 19289
70 % 2 2 17762
50 % 2 2 15432
40 % 2 2 13743
30 % 2 2 11758
Entity #2 | Chains: D
transcription factor inhibitor I-kappa-B-beta protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56856
95 % 2 2 29075 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 2 28066
70 % 2 2 25346
50 % 2 2 21706
40 % 2 2 19150
30 % 2 2 16270

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.