Sequence Similarity Clusters for the Entities in PDB 1K3Z

Entity #1 | Chains: A,B
Transcription factor p65 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23578
95 % 2 2 20212 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 2 2 19650
70 % 2 2 18105
50 % 2 2 15712
40 % 2 2 13979
30 % 2 2 11955
Entity #2 | Chains: D
transcription factor inhibitor I-kappa-B-beta protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57916
95 % 2 2 29622 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 2 28574
70 % 2 2 25772
50 % 2 2 22068
40 % 2 2 19457
30 % 2 2 16518

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures