Sequence Similarity Clusters for the Entities in PDB 1K3X

Entity #1 | Chains: B
5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Endonuclease VIII protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 20078
95 % 1 8 7720 Flexibility: Medium
Max RMSD: 8.9, Avg RMSD: 4.8
PDBFlex
90 % 1 8 7669
70 % 1 8 7463
50 % 1 8 6872
40 % 1 8 6385
30 % 1 71 712

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.