Sequence Similarity Clusters for the Entities in PDB 1K3B

Entity #1 | Chains: A
dipeptydil-peptidase I exclusion domain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4484
95 % 3 7 5279 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 7 5301
70 % 3 7 5210
50 % 3 7 4985
40 % 3 7 4718
30 % 3 7 4312
Entity #2 | Chains: B
dipeptydil-peptidase I light chain protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4451
95 % 3 7 5247 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 7 5267
70 % 3 7 5169
50 % 3 7 4944
40 % 3 7 4676
30 % 3 7 4275
Entity #3 | Chains: C
dipeptydil-peptidase I heavy chain protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3804
95 % 5 9 4595 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 9 4619
70 % 5 9 4530
50 % 5 9 4351
40 % 5 9 4149
30 % 5 9 3824

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures