Sequence Similarity Clusters for the Entities in PDB 1K3B

Entity #1 | Chains: A
dipeptydil-peptidase I exclusion domain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4400
95 % 3 7 5193 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 7 5216
70 % 3 7 5131
50 % 3 7 4907
40 % 3 7 4647
30 % 3 7 4252
Entity #2 | Chains: B
dipeptydil-peptidase I light chain protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4367
95 % 3 7 5161 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 7 5183
70 % 3 7 5090
50 % 3 7 4868
40 % 3 7 4609
30 % 3 7 4220
Entity #3 | Chains: C
dipeptydil-peptidase I heavy chain protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3742
95 % 5 9 4529 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 9 4549
70 % 5 9 4463
50 % 5 9 4287
40 % 5 9 4092
30 % 5 9 3781

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.