Sequence Similarity Clusters for the Entities in PDB 1K3B

Entity #1 | Chains: A
dipeptydil-peptidase I exclusion domain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4220
95 % 3 7 4994 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 7 5012
70 % 3 7 4952
50 % 3 7 4752
40 % 3 7 4502
30 % 3 7 4121
Entity #2 | Chains: B
dipeptydil-peptidase I light chain protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4189
95 % 3 7 4963 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 7 4980
70 % 3 7 4911
50 % 3 7 4714
40 % 3 7 4466
30 % 3 7 4091
Entity #3 | Chains: C
dipeptydil-peptidase I heavy chain protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3590
95 % 5 9 4369 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 9 4394
70 % 5 9 4320
50 % 5 9 4164
40 % 5 9 3973
30 % 5 9 3664

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.