Sequence Similarity Clusters for the Entities in PDB 1K3B

Entity #1 | Chains: A
dipeptydil-peptidase I exclusion domain protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4612
95 % 3 7 5408 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 7 5437
70 % 3 7 5337
50 % 3 7 5090
40 % 3 7 4812
30 % 3 7 4405
Entity #2 | Chains: B
dipeptydil-peptidase I light chain protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4577
95 % 3 7 5376 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 7 5402
70 % 3 7 5299
50 % 3 7 5052
40 % 3 7 4773
30 % 3 7 4371
Entity #3 | Chains: C
dipeptydil-peptidase I heavy chain protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3909
95 % 5 9 4717 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 9 4745
70 % 5 9 4646
50 % 5 9 4452
40 % 5 9 4230
30 % 5 9 3907

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures