Sequence Similarity Clusters for the Entities in PDB 1K2D

Entity #1 | Chains: A
H-2 class II histocompatibility antigen, A-U alpha chain protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 14863
95 % 6 16 2237 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 6 23 1398
70 % 12 44 714
50 % 53 146 173
40 % 53 146 188
30 % 105 304 93
Entity #2 | Chains: B
H-2 class II histocompatibility antigen, A-U beta chain protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 14864
95 % 4 7 7529 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 5 14 3466
70 % 51 137 163
50 % 53 146 172
40 % 53 146 187
30 % 106 304 93
Entity #3 | Chains: P
Myelin Basic Protein peptide with 8 residue linker peptide protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72383
95 % 1 1 50520
90 % 1 1 47988
70 % 1 1 42165
50 % 1 1 36103
40 % 1 1 31891
30 % 1 1 27082

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.