Sequence Similarity Clusters for the Entities in PDB 1K2D

Entity #1 | Chains: A
H-2 class II histocompatibility antigen, A-U alpha chain protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14094
95 % 6 16 2119
90 % 6 23 1335
70 % 11 42 699
50 % 50 140 175
40 % 50 140 189
30 % 99 292 94
Entity #2 | Chains: B
H-2 class II histocompatibility antigen, A-U beta chain protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14095
95 % 4 7 7130
90 % 5 14 3296
70 % 48 131 161
50 % 50 140 174
40 % 50 140 188
30 % 100 292 94
Entity #3 | Chains: P
Myelin Basic Protein peptide with 8 residue linker peptide protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69282
95 % 1 1 48375
90 % 1 1 46017
70 % 1 1 40548
50 % 1 1 34768
40 % 1 1 30708
30 % 1 1 26074

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.