Sequence Similarity Clusters for the Entities in PDB 1K28

Entity #1 | Chains: A
TAIL-ASSOCIATED LYSOZYME protein, length: 584 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 9946
95 % 2 5 7429 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 2 5 7384
70 % 2 5 7202
50 % 2 5 6626
40 % 2 5 6175
30 % 2 5 5525
Entity #2 | Chains: D
BASEPLATE STRUCTURAL PROTEIN GP27 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 6941
95 % 2 5 7512 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.2
PDBFlex
90 % 2 5 7466
70 % 2 5 7282
50 % 2 5 6699
40 % 2 5 6237
30 % 2 5 5580

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.