Sequence Similarity Clusters for the Entities in PDB 1K28

Entity #1 | Chains: A
TAIL-ASSOCIATED LYSOZYME protein, length: 584 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 10077
95 % 2 5 7523
90 % 2 5 7473
70 % 2 5 7279
50 % 2 5 6701
40 % 2 5 6246
30 % 2 5 5587
Entity #2 | Chains: D
BASEPLATE STRUCTURAL PROTEIN GP27 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7034
95 % 2 5 7606 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 5 7555
70 % 2 5 7359
50 % 2 5 6775
40 % 2 5 6309
30 % 2 5 5642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.