Sequence Similarity Clusters for the Entities in PDB 1K28

Entity #1 | Chains: A
TAIL-ASSOCIATED LYSOZYME protein, length: 584 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 9811
95 % 2 5 7301 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 2 5 7261
70 % 2 5 7047
50 % 2 5 6497
40 % 2 5 6058
30 % 2 5 5427
Entity #2 | Chains: D
BASEPLATE STRUCTURAL PROTEIN GP27 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 6838
95 % 2 5 7383 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.2
PDBFlex
90 % 2 5 7341
70 % 2 5 7127
50 % 2 5 6570
40 % 2 5 6122
30 % 2 5 5483

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.