Sequence Similarity Clusters for the Entities in PDB 1K28

Entity #1 | Chains: A
TAIL-ASSOCIATED LYSOZYME protein, length: 584 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 10278
95 % 2 5 7659
90 % 2 5 7607
70 % 2 5 7396
50 % 2 5 6810
40 % 2 5 6347
30 % 2 5 5681
Entity #2 | Chains: D
BASEPLATE STRUCTURAL PROTEIN GP27 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7168
95 % 2 5 7743 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 5 7690
70 % 2 5 7479
50 % 2 5 6885
40 % 2 5 6413
30 % 2 5 5737

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures