Sequence Similarity Clusters for the Entities in PDB 1K28

Entity #1 | Chains: A
TAIL-ASSOCIATED LYSOZYME protein, length: 584 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 10454
95 % 2 5 7765
90 % 2 5 7711
70 % 2 5 7494
50 % 2 5 6903
40 % 2 5 6428
30 % 2 5 5757
Entity #2 | Chains: D
BASEPLATE STRUCTURAL PROTEIN GP27 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7272
95 % 2 5 7851 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 5 7795
70 % 2 5 7580
50 % 2 5 6982
40 % 2 5 6496
30 % 2 5 5814

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures