Sequence Similarity Clusters for the Entities in PDB 1K25

Entity #1 | Chains: A,B,C,D
low-affinity PENICILLIN-BINDING PROTEIN 2X protein, length: 685 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17259
95 % 1 1 15958 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 1 1 15661
70 % 5 6 6626
50 % 6 7 5849
40 % 6 7 5494
30 % 6 7 4931

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures