Sequence Similarity Clusters for the Entities in PDB 1K22

Entity #1 | Chains: L
Prothrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 166 335 45
95 % 166 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 166 336 66
70 % 166 338 78
50 % 166 338 107
40 % 166 338 131
30 % 166 338 136
Entity #2 | Chains: H
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 145 290 57
95 % 182 374 35
90 % 183 381 39
70 % 183 405 46
50 % 183 405 84
40 % 998 1698 4
30 % 1070 1848 6
Entity #3 | Chains: I
Hirudin variant-2 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures