Sequence Similarity Clusters for the Entities in PDB 1K21

Entity #1 | Chains: L
Prothrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 167 337 57
95 % 169 345 72 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 169 345 78
70 % 169 345 92
50 % 169 345 125
40 % 169 345 146
30 % 169 345 160
Entity #2 | Chains: H
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 163 334 58
95 % 184 381 59 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 185 388 64
70 % 185 412 62
50 % 185 412 95
40 % 1117 1926 4
30 % 1123 1940 6
Entity #3 | Chains: I
Hirudin variant-2 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures