Sequence Similarity Clusters for the Entities in PDB 1K1K

Entity #1 | Chains: A
HEMOGLOBIN ALPHA CHAIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 98 257 14
95 % 102 268 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 102 268 19
70 % 118 335 18
50 % 286 761 4
40 % 290 766 7
30 % 721 1319 6
Entity #2 | Chains: B
HEMOGLOBIN BETA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 95 218 43
95 % 104 254 25 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 107 259 20
70 % 131 350 15
50 % 287 761 4
40 % 291 766 7
30 % 722 1319 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures