Sequence Similarity Clusters for the Entities in PDB 1K0Y

Entity #1 | Chains: A,C
hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 222 22
95 % 55 250 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 56 251 20
70 % 67 332 15
50 % 161 754 4
40 % 162 759 8
30 % 455 1218 8
Entity #2 | Chains: B,D
hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 169 50
95 % 55 250 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 56 255 19
70 % 70 346 12
50 % 162 754 4
40 % 163 759 8
30 % 456 1218 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures