Sequence Similarity Clusters for the Entities in PDB 1K0Y

Entity #1 | Chains: A,C
hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 254 12
95 % 57 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 57 265 18
70 % 67 332 17
50 % 161 755 4
40 % 162 760 7
30 % 478 1299 6
Entity #2 | Chains: B,D
hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 215 41
95 % 55 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 56 256 21
70 % 70 347 14
50 % 162 755 4
40 % 163 760 7
30 % 479 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures