Sequence Similarity Clusters for the Entities in PDB 1K01

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 29 1078
95 % 22 29 1499
90 % 22 29 1534
70 % 22 29 1570
50 % 156 182 117
40 % 156 182 138
30 % 200 310 81
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 28 1144
95 % 23 30 1472
90 % 23 30 1505
70 % 23 30 1535
50 % 23 30 1580
40 % 23 30 1597
30 % 23 30 1556
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 34 933
95 % 23 34 1294
90 % 23 34 1316
70 % 23 34 1343
50 % 151 181 122
40 % 194 306 82
30 % 194 306 97

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.