Sequence Similarity Clusters for the Entities in PDB 1K01

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 29 1150
95 % 22 29 1565
90 % 22 29 1600
70 % 22 29 1640
50 % 156 182 124
40 % 156 182 142
30 % 202 324 87
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 28 1222
95 % 23 30 1535
90 % 23 30 1571
70 % 23 30 1602
50 % 23 30 1647
40 % 23 30 1659
30 % 23 30 1619
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 34 984
95 % 23 34 1357
90 % 23 34 1376
70 % 23 34 1397
50 % 151 181 130
40 % 196 319 86
30 % 196 319 101

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.