Sequence Similarity Clusters for the Entities in PDB 1K01

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 29 1274
95 % 22 29 1710 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 22 29 1753
70 % 22 29 1769
50 % 162 190 136
40 % 209 359 78
30 % 209 359 92
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1344
95 % 23 30 1674 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 30 1715
70 % 23 30 1728
50 % 23 30 1762
40 % 23 30 1768
30 % 23 30 1729
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 34 1084
95 % 23 34 1467 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 23 34 1492
70 % 23 34 1490
50 % 164 207 126
40 % 208 355 83
30 % 208 355 97

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures