Sequence Similarity Clusters for the Entities in PDB 1K01

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 29 1112
95 % 22 29 1534
90 % 22 29 1571
70 % 22 29 1606
50 % 156 182 119
40 % 156 182 138
30 % 201 319 84
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 28 1180
95 % 23 30 1507
90 % 23 30 1543
70 % 23 30 1569
50 % 23 30 1612
40 % 23 30 1625
30 % 23 30 1590
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 34 955
95 % 23 34 1320
90 % 23 34 1342
70 % 23 34 1370
50 % 151 181 123
40 % 195 315 84
30 % 195 315 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.