Sequence Similarity Clusters for the Entities in PDB 1K01

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 29 1131
95 % 22 29 1553
90 % 22 29 1588
70 % 22 29 1626
50 % 156 182 122
40 % 156 182 140
30 % 201 321 85
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 28 1197
95 % 23 30 1523
90 % 23 30 1558
70 % 23 30 1587
50 % 23 30 1627
40 % 23 30 1640
30 % 23 30 1603
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 34 974
95 % 23 34 1337
90 % 23 34 1356
70 % 23 34 1386
50 % 151 181 126
40 % 195 317 84
30 % 195 317 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.