Sequence Similarity Clusters for the Entities in PDB 1K01

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 29 1214
95 % 22 29 1633
90 % 22 29 1671
70 % 22 29 1695
50 % 158 184 127
40 % 205 344 75
30 % 205 344 87
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 28 1279
95 % 23 30 1603
90 % 23 30 1640
70 % 23 30 1654
50 % 23 30 1690
40 % 23 30 1697
30 % 23 30 1664
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 34 1030
95 % 23 34 1413
90 % 23 34 1435
70 % 23 34 1433
50 % 160 198 124
40 % 199 335 87
30 % 199 335 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.