Sequence Similarity Clusters for the Entities in PDB 1JZZ

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 29 1197
95 % 14 29 1609 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 14 29 1645
70 % 14 29 1664
50 % 140 183 127
40 % 176 340 77
30 % 176 340 88
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 28 1266
95 % 14 30 1579 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 14 30 1616
70 % 14 30 1628
50 % 14 30 1660
40 % 14 30 1671
30 % 14 30 1637
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 34 1010
95 % 14 34 1385 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 14 34 1403
70 % 14 34 1413
50 % 141 196 124
40 % 170 333 88
30 % 170 333 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.