Sequence Similarity Clusters for the Entities in PDB 1JZY

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 29 1222
95 % 20 29 1640 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 20 29 1677
70 % 20 29 1699
50 % 155 184 129
40 % 199 348 76
30 % 199 348 87
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1286
95 % 21 30 1612 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 21 30 1648
70 % 21 30 1660
50 % 21 30 1695
40 % 21 30 1701
30 % 21 30 1667
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 34 1034
95 % 21 34 1419 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 21 34 1442
70 % 21 34 1439
50 % 157 201 126
40 % 198 344 81
30 % 198 344 93

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.