Sequence Similarity Clusters for the Entities in PDB 1JZY

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 29 1253
95 % 20 29 1666
90 % 20 29 1704
70 % 20 29 1725
50 % 156 185 137
40 % 200 352 77
30 % 200 352 88
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1319
95 % 21 30 1637 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 21 30 1673
70 % 21 30 1687
50 % 21 30 1725
40 % 21 30 1730
30 % 21 30 1691
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 34 1060
95 % 21 34 1442 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 21 34 1463
70 % 21 34 1462
50 % 158 202 132
40 % 199 348 83
30 % 199 348 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures