Sequence Similarity Clusters for the Entities in PDB 1JZY

Entity #1 | Chains: A
23S rRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
Ribosomal Protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 29 1209
95 % 20 29 1623
90 % 20 29 1660
70 % 20 29 1681
50 % 154 203 126
40 % 198 341 77
30 % 198 341 88
Entity #3 | Chains: L
Ribosomal Protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 1274
95 % 21 30 1593 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 21 30 1629
70 % 21 30 1642
50 % 21 30 1678
40 % 21 30 1686
30 % 21 30 1653
Entity #4 | Chains: M
Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 34 1026
95 % 21 34 1407 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 21 34 1428
70 % 21 34 1426
50 % 156 197 122
40 % 192 334 87
30 % 192 334 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.