Sequence Similarity Clusters for the Entities in PDB 1JZD

Entity #1 | Chains: A,B
thiol:disulfide interchange protein dsbc protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 8037
95 % 3 5 8088 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.1
PDBFlex
90 % 3 5 8018
70 % 5 7 5257
50 % 6 8 4351
40 % 6 9 4019
30 % 6 9 3643
Entity #2 | Chains: C
thiol:disulfide interchange protein dsbd protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49196
95 % 4 6 8009 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 4 6 7939
70 % 4 6 7688
50 % 4 6 7063
40 % 4 6 6533
30 % 4 6 5709

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1L6P 1 A Thiol:disulfide interchange protein dsbD Residues 20-143 562 1.8.1.8 | Details
2 3PFU 1 A Thiol:disulfide interchange protein dsbD N-terminal domain (reduced form) 562 1.8.1.8 | Details
3 1Z5Y 1 D Thiol:disulfide interchange protein dsbD N-Terminal Domain, Residues 1-143 562 1.8.1.8 | Details
4 1JZD 2 C thiol:disulfide interchange protein dsbd DsbDalpha 562 1.8.1.8 | Details
5 5NHI 1 A, B Thiol:disulfide interchange protein DsbD 562 1.8.1.8 | Details
6 1VRS 1 A, B, C Thiol:disulfide interchange protein dsbD N-terminal domain, Residues 1-143 562 1.8.1.8 | Details