Sequence Similarity Clusters for the Entities in PDB 1JZD

Entity #1 | Chains: A,B
thiol:disulfide interchange protein dsbc protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 8251
95 % 3 5 8304 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.1
PDBFlex
90 % 3 5 8223
70 % 5 7 5401
50 % 6 8 4470
40 % 6 9 4122
30 % 6 9 3726
Entity #2 | Chains: C
thiol:disulfide interchange protein dsbd protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50316
95 % 4 6 8219 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 4 6 8136
70 % 4 6 7896
50 % 4 6 7227
40 % 4 6 6671
30 % 4 6 5812

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1L6P 1 A Thiol:disulfide interchange protein dsbD Residues 20-143 562 1.8.1.8 | Details
2 3PFU 1 A Thiol:disulfide interchange protein dsbD N-terminal domain (reduced form) 562 1.8.1.8 | Details
3 1Z5Y 1 D Thiol:disulfide interchange protein dsbD N-Terminal Domain, Residues 1-143 562 1.8.1.8 | Details
4 1JZD 2 C thiol:disulfide interchange protein dsbd DsbDalpha 562 1.8.1.8 | Details
5 5NHI 1 A, B Thiol:disulfide interchange protein DsbD 562 1.8.1.8 | Details
6 1VRS 1 A, B, C Thiol:disulfide interchange protein dsbD N-terminal domain, Residues 1-143 562 1.8.1.8 | Details