Sequence Similarity Clusters for the Entities in PDB 1JZD

Entity #1 | Chains: A,B
thiol:disulfide interchange protein dsbc protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12929
95 % 3 5 7835 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.1
PDBFlex
90 % 3 5 7783
70 % 5 7 5085
50 % 6 8 4236
40 % 6 9 3803
30 % 6 9 3542
Entity #2 | Chains: C
thiol:disulfide interchange protein dsbd protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66683
95 % 4 5 10735 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 4 5 10587
70 % 4 5 10062
50 % 4 5 9116
40 % 4 5 8344
30 % 4 5 7355

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1EEJ 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN 562 5.3.4.1 | Details
2 1JZO 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC DsbC 562
3 1JZD 1 A, B thiol:disulfide interchange protein dsbc DsbC + N-terminal 4 residues from His-tag 562
4 1TJD 1 A Thiol:disulfide interchange protein dsbC 562 5.3.4.1 | Details
5 1G0T 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC ACTIVE SITE MUTANT C101S 562 5.3.4.1 | Details