Sequence Similarity Clusters for the Entities in PDB 1JZD

Entity #1 | Chains: A,B
thiol:disulfide interchange protein dsbc protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7972
95 % 3 5 8033 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.1
PDBFlex
90 % 3 5 7965
70 % 5 7 5233
50 % 6 8 4326
40 % 6 9 3741
30 % 6 9 3623
Entity #2 | Chains: C
thiol:disulfide interchange protein dsbd protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48951
95 % 4 6 7954 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 4 6 7886
70 % 4 6 7644
50 % 4 6 7020
40 % 4 6 6491
30 % 4 6 5676

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1EEJ 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN 562 5.3.4.1 | Details
2 1JZO 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC DsbC 562
3 1JZD 1 A, B thiol:disulfide interchange protein dsbc DsbC + N-terminal 4 residues from His-tag 562
4 1TJD 1 A Thiol:disulfide interchange protein dsbC 562 5.3.4.1 | Details
5 1G0T 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC ACTIVE SITE MUTANT C101S 562 5.3.4.1 | Details