Sequence Similarity Clusters for the Entities in PDB 1JZD

Entity #1 | Chains: A,B
thiol:disulfide interchange protein dsbc protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 8173
95 % 3 5 8215 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.1
PDBFlex
90 % 3 5 8141
70 % 5 7 5364
50 % 6 8 4447
40 % 6 9 3837
30 % 6 9 3712
Entity #2 | Chains: C
thiol:disulfide interchange protein dsbd protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49874
95 % 4 6 8135 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 4 6 8061
70 % 4 6 7815
50 % 4 6 7177
40 % 4 6 6632
30 % 4 6 5788

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1EEJ 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN 562 5.3.4.1 | Details
2 1JZO 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC DsbC 562
3 1JZD 1 A, B thiol:disulfide interchange protein dsbc DsbC + N-terminal 4 residues from His-tag 562
4 1TJD 1 A Thiol:disulfide interchange protein dsbC 562 5.3.4.1 | Details
5 1G0T 1 A, B THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC ACTIVE SITE MUTANT C101S 562 5.3.4.1 | Details