Sequence Similarity Clusters for the Entities in PDB 1JZD

Entity #1 | Chains: A,B
thiol:disulfide interchange protein dsbc protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13168
95 % 3 5 7968 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.1
PDBFlex
90 % 3 5 7911
70 % 5 7 5178
50 % 6 8 4302
40 % 6 9 3861
30 % 6 9 3593
Entity #2 | Chains: C
thiol:disulfide interchange protein dsbd protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67681
95 % 4 5 10915 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 4 5 10765
70 % 4 5 10230
50 % 4 5 9265
40 % 4 5 8481
30 % 4 5 7471

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures