Sequence Similarity Clusters for the Entities in PDB 1JZD

Entity #1 | Chains: A,B
thiol:disulfide interchange protein dsbc protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12878
95 % 3 5 7806 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.1
PDBFlex
90 % 3 5 7757
70 % 5 7 5059
50 % 6 8 4218
40 % 6 9 3787
30 % 6 9 3527
Entity #2 | Chains: C
thiol:disulfide interchange protein dsbd protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66377
95 % 4 5 10691 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 4 5 10545
70 % 4 5 10020
50 % 4 5 9077
40 % 4 5 8310
30 % 4 5 7326

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.