Sequence Similarity Clusters for the Entities in PDB 1JYO

Entity #1 | Chains: A,B,C,D
SicP protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23283
95 % 1 1 19984 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 1 19448
70 % 1 1 17924
50 % 1 1 15561
40 % 1 1 13857
30 % 1 1 11857
Entity #2 | Chains: E,F
protein tyrosine phosphatase SptP protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46980
95 % 1 1 35148 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 33578
70 % 1 1 29865
50 % 1 1 25484
40 % 1 1 22450
30 % 1 1 19004

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.