Sequence Similarity Clusters for the Entities in PDB 1JYO

Entity #1 | Chains: A,B,C,D
SicP protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23762
95 % 1 1 20351 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 1 19789
70 % 1 1 18226
50 % 1 1 15814
40 % 1 1 14073
30 % 1 1 12037
Entity #2 | Chains: E,F
protein tyrosine phosphatase SptP protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47793
95 % 1 1 35702 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 34085
70 % 1 1 30296
50 % 1 1 25831
40 % 1 1 22755
30 % 1 1 19250

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures