Sequence Similarity Clusters for the Entities in PDB 1JYO

Entity #1 | Chains: A,B,C,D
SicP protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24100
95 % 1 1 20619 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 1 20041
70 % 1 1 18447
50 % 1 1 15996
40 % 1 1 14228
30 % 1 1 12166
Entity #2 | Chains: E,F
protein tyrosine phosphatase SptP protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48353
95 % 1 1 36110 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 34461
70 % 1 1 30618
50 % 1 1 26094
40 % 1 1 22989
30 % 1 1 19451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures