Sequence Similarity Clusters for the Entities in PDB 1JYO

Entity #1 | Chains: A,B,C,D
SicP protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22678
95 % 1 1 19455 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 1 18931
70 % 1 1 17489
50 % 1 1 15210
40 % 1 1 13551
30 % 1 1 11590
Entity #2 | Chains: E,F
protein tyrosine phosphatase SptP protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45843
95 % 1 1 34306 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 32806
70 % 1 1 29269
50 % 1 1 25016
40 % 1 1 22041
30 % 1 1 18655

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.