Sequence Similarity Clusters for the Entities in PDB 1JYO

Entity #1 | Chains: A,B,C,D
SicP protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21017
95 % 1 1 18944 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 1 18429
70 % 1 1 15017
50 % 1 1 13219
40 % 1 1 11850
30 % 1 1 10037
Entity #2 | Chains: E,F
protein tyrosine phosphatase SptP protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37834
95 % 1 1 27305 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 26289
70 % 1 1 23775
50 % 1 1 23586
40 % 1 1 20769
30 % 1 1 17326

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures