Sequence Similarity Clusters for the Entities in PDB 1JYM

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
Peptide Deformylase protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 6576
95 % 3 3 2860 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 3 3 2901
70 % 3 3 2865
50 % 3 3 2821
40 % 3 3 2774
30 % 112 121 226

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures