Sequence Similarity Clusters for the Entities in PDB 1JYM

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
Peptide Deformylase protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 6472
95 % 3 3 2800 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 3 3 2843
70 % 3 3 2811
50 % 3 3 2769
40 % 3 3 2729
30 % 112 121 223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.