Sequence Similarity Clusters for the Entities in PDB 1JYI

Entity #1 | Chains: A,B,C,D
Concanavalin-Br protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 73 88 117
95 % 74 89 146 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 76 94 153
70 % 98 118 153
50 % 98 118 182
40 % 98 118 193
30 % 98 118 210
Entity #2 | Chains: P,Q,R,S
12-mer peptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures