Sequence Similarity Clusters for the Entities in PDB 1JYC

Entity #1 | Chains: A,B,C,D
Concanavalin-Br protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 57 180
95 % 72 84 141 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 73 88 147
70 % 93 110 140
50 % 93 110 168
40 % 93 110 185
30 % 93 110 199
Entity #2 | Chains: P,Q,R,S
15-mer peptide protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.