Sequence Similarity Clusters for the Entities in PDB 1JY8

Entity #1 | Chains: A
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 17 1114
95 % 6 20 1039 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 6 20 1069
70 % 8 27 728
50 % 33 54 302
40 % 39 60 268
30 % 42 63 281

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures