Sequence Similarity Clusters for the Entities in PDB 1JY7

Entity #1 | Chains: A,C,P,R,U,W
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 224 254 12
95 % 234 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 234 265 18
70 % 291 332 17
50 % 676 755 4
40 % 681 760 7
30 % 1177 1299 6
Entity #2 | Chains: B,D,Q,S,V,X
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 195 215 41
95 % 228 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 233 256 21
70 % 310 347 14
50 % 677 755 4
40 % 682 760 7
30 % 1178 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures