Sequence Similarity Clusters for the Entities in PDB 1JY7

Entity #1 | Chains: A,C,P,R,U,W
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 187 213 22
95 % 217 244 30 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 218 245 31
70 % 286 326 15
50 % 665 742 4
40 % 670 747 7
30 % 1100 1190 8
Entity #2 | Chains: B,D,Q,S,V,X
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 144 163 50
95 % 222 244 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 227 249 19
70 % 304 340 13
50 % 666 742 4
40 % 671 747 7
30 % 1101 1190 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.