Sequence Similarity Clusters for the Entities in PDB 1JY7

Entity #1 | Chains: A,C,P,R,U,W
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 195 222 22
95 % 222 250 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 223 251 20
70 % 291 332 14
50 % 675 754 4
40 % 680 759 8
30 % 1122 1214 8
Entity #2 | Chains: B,D,Q,S,V,X
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 149 169 50
95 % 227 250 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 232 255 19
70 % 309 346 11
50 % 676 754 4
40 % 681 759 8
30 % 1123 1214 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures