Sequence Similarity Clusters for the Entities in PDB 1JY3

Entity #1 | Chains: N,Q
FIBRINOGEN ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18818
95 % 2 2 17211 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 2 16811
70 % 2 2 15617
50 % 2 2 13697
40 % 2 2 12241
30 % 2 2 10343
Entity #2 | Chains: O,R
FIBRINOGEN BETA CHAIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19594
95 % 2 2 17846 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 2 2 17404
70 % 2 2 16113
50 % 2 2 14097
40 % 2 2 12584
30 % 2 2 10603
Entity #3 | Chains: P,S
FIBRINOGEN GAMMA-B CHAIN protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18816
95 % 2 2 17209 Flexibility: Medium
Max RMSD: 4.6, Avg RMSD: 3.1
PDBFlex
90 % 2 2 16809
70 % 2 3 12289
50 % 2 3 10948
40 % 2 3 9850
30 % 2 3 8425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures