Sequence Similarity Clusters for the Entities in PDB 1JY3

Entity #1 | Chains: N,Q
FIBRINOGEN ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25129
95 % 2 2 21402 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 2 20785
70 % 2 2 19087
50 % 2 2 16573
40 % 2 2 14771
30 % 2 2 12645
Entity #2 | Chains: O,R
FIBRINOGEN BETA CHAIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25101
95 % 2 2 21375 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 2 2 20759
70 % 2 2 19065
50 % 2 2 16554
40 % 2 2 14755
30 % 2 2 12629
Entity #3 | Chains: P,S
FIBRINOGEN GAMMA-B CHAIN protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25166
95 % 2 2 21435 Flexibility: Medium
Max RMSD: 4.6, Avg RMSD: 3.1
PDBFlex
90 % 2 2 20817
70 % 2 3 12767
50 % 2 3 11385
40 % 2 3 10325
30 % 2 3 9003

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures