Sequence Similarity Clusters for the Entities in PDB 1JY2

Entity #1 | Chains: N,Q
FIBRINOGEN ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23772
95 % 1 2 20280 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 19717
70 % 1 2 18164
50 % 1 2 15812
40 % 1 2 14108
30 % 1 2 12080
Entity #2 | Chains: O,R
FIBRINOGEN BETA CHAIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23746
95 % 1 2 20255 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 1 2 19694
70 % 1 2 18144
50 % 1 2 15793
40 % 1 2 14091
30 % 1 2 12063
Entity #3 | Chains: P,S
FIBRINOGEN GAMMA-B CHAIN protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23807
95 % 1 2 20310 Flexibility: Medium
Max RMSD: 4.6, Avg RMSD: 3.1
PDBFlex
90 % 1 2 19748
70 % 1 3 12100
50 % 1 3 10816
40 % 1 3 9820
30 % 1 3 8554

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.