Sequence Similarity Clusters for the Entities in PDB 1JY2

Entity #1 | Chains: N,Q
FIBRINOGEN ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25511
95 % 1 2 21709 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 1 2 21075
70 % 1 2 19340
50 % 1 2 16781
40 % 1 2 14951
30 % 1 2 12796
Entity #2 | Chains: O,R
FIBRINOGEN BETA CHAIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25483
95 % 1 2 21682 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 2 21049
70 % 1 2 19318
50 % 1 2 16762
40 % 1 2 14935
30 % 1 2 12780
Entity #3 | Chains: P,S
FIBRINOGEN GAMMA-B CHAIN protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25550
95 % 1 2 21745 Flexibility: Medium
Max RMSD: 4.6, Avg RMSD: 3.1
PDBFlex
90 % 1 2 21109
70 % 1 3 12947
50 % 1 3 11540
40 % 1 3 10456
30 % 1 3 9117

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures