Sequence Similarity Clusters for the Entities in PDB 1JY2

Entity #1 | Chains: N,Q
FIBRINOGEN ALPHA CHAIN protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24536
95 % 1 2 20944 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 1 2 20364
70 % 1 2 18682
50 % 1 2 16243
40 % 1 2 14490
30 % 1 2 12407
Entity #2 | Chains: O,R
FIBRINOGEN BETA CHAIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24508
95 % 1 2 20917 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 2 20338
70 % 1 2 18660
50 % 1 2 16224
40 % 1 2 14474
30 % 1 2 12391
Entity #3 | Chains: P,S
FIBRINOGEN GAMMA-B CHAIN protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24574
95 % 1 2 20977 Flexibility: Medium
Max RMSD: 4.6, Avg RMSD: 3.1
PDBFlex
90 % 1 2 20397
70 % 1 3 12502
50 % 1 3 11153
40 % 1 3 10119
30 % 1 3 8826

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.