Sequence Similarity Clusters for the Entities in PDB 1JXQ

Entity #1 | Chains: A,B,C,D
Caspase-9 protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 5048
95 % 2 4 3931 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.0
PDBFlex
90 % 2 4 3994
70 % 2 4 3914
50 % 2 4 3810
40 % 2 4 3620
30 % 98 113 243
Entity #2 | Chains: E,F
benzoxycarbonyl-Val-Ala-Asp-fluoromethyl ketone Inhibitor protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures