Sequence Similarity Clusters for the Entities in PDB 1JXL

Entity #1 | Chains: P
5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: T
5'-D(*T*TP*CP*GP*AP*AP*(BRU)P*CP*CP*TP*(BRU)P*CP*CP*CP*CP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA polymerase IV (family Y) protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 114 179
95 % 47 123 229 Flexibility: Low
Max RMSD: 16.3, Avg RMSD: 1.3
PDBFlex
90 % 47 123 241
70 % 53 135 240
50 % 53 135 263
40 % 53 135 272
30 % 53 135 281

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures