Sequence Similarity Clusters for the Entities in PDB 1JWU

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 69 221
95 % 24 76 294
90 % 26 92 223
70 % 26 92 258
50 % 35 142 173
40 % 35 142 187
30 % 69 296 81
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 481
95 % 12 41 621
90 % 24 73 321
70 % 34 133 161
50 % 35 142 172
40 % 35 142 186
30 % 70 296 81
Entity #3 | Chains: C
HA peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 8130
95 % 15 29 1242
90 % 15 29 1266
70 % 15 29 1299
50 % 24 56 439
40 % 25 59 419
30 % 41 88 291

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.