Sequence Similarity Clusters for the Entities in PDB 1JWU

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 74 227
95 % 27 81 288
90 % 29 97 232
70 % 29 97 264
50 % 39 149 176
40 % 39 149 189
30 % 77 310 94
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 38 564
95 % 12 41 713
90 % 26 76 331
70 % 38 140 161
50 % 39 149 175
40 % 39 149 188
30 % 78 310 94
Entity #3 | Chains: C
HA peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 8794
95 % 15 29 1348
90 % 15 29 1370
70 % 15 29 1389
50 % 24 56 492
40 % 25 59 478
30 % 41 88 321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.