Sequence Similarity Clusters for the Entities in PDB 1JWS

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 74 227
95 % 42 81 288 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 47 97 233
70 % 47 97 264
50 % 65 149 176
40 % 65 149 191
30 % 133 310 98
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 38 566
95 % 20 41 713 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 40 76 333
70 % 63 140 161
50 % 65 149 175
40 % 65 149 190
30 % 134 310 98
Entity #3 | Chains: C
HA peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58382
95 % 26 29 1353 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.1
PDBFlex
90 % 26 29 1376
70 % 26 29 1394
50 % 38 56 491
40 % 40 59 481
30 % 61 88 322

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.