Sequence Similarity Clusters for the Entities in PDB 1JWM

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 74 227
95 % 47 81 289 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 54 97 233
70 % 54 97 265
50 % 76 149 176
40 % 76 149 192
30 % 157 310 98
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 567
95 % 25 41 715 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 45 76 333
70 % 74 140 161
50 % 76 149 175
40 % 76 149 191
30 % 158 310 98
Entity #3 | Chains: C
HA peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58462
95 % 27 29 1355 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.1
PDBFlex
90 % 27 29 1378
70 % 27 29 1396
50 % 41 56 492
40 % 43 59 482
30 % 65 88 322

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.