Sequence Similarity Clusters for the Entities in PDB 1JWM

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 69 225
95 % 44 76 300
90 % 51 92 230
70 % 51 92 263
50 % 72 142 177
40 % 72 142 191
30 % 149 296 99
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 38 500
95 % 25 41 650
90 % 43 73 327
70 % 70 133 164
50 % 72 142 176
40 % 72 142 190
30 % 150 296 99
Entity #3 | Chains: C
HA peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55269
95 % 27 29 1267
90 % 27 29 1293
70 % 27 29 1327
50 % 41 56 460
40 % 43 59 453
30 % 65 88 299

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.