Sequence Similarity Clusters for the Entities in PDB 1JWM

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 71 228
95 % 45 78 289
90 % 52 94 229
70 % 52 94 264
50 % 74 146 173
40 % 74 146 187
30 % 153 304 83
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 38 549
95 % 25 41 681
90 % 43 73 337
70 % 72 137 163
50 % 74 146 172
40 % 74 146 186
30 % 154 304 83
Entity #3 | Chains: C
HA peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56414
95 % 27 29 1306
90 % 27 29 1328
70 % 27 29 1353
50 % 41 56 472
40 % 43 59 468
30 % 65 88 311

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.