Sequence Similarity Clusters for the Entities in PDB 1JWM

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 69 223
95 % 44 76 297
90 % 51 92 228
70 % 51 92 262
50 % 72 142 175
40 % 72 142 189
30 % 149 296 95
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 38 492
95 % 25 41 645
90 % 43 73 324
70 % 70 133 163
50 % 72 142 174
40 % 72 142 188
30 % 150 296 95
Entity #3 | Chains: C
HA peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54756
95 % 27 29 1255
90 % 27 29 1281
70 % 27 29 1315
50 % 41 56 456
40 % 43 59 441
30 % 65 88 295

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.