Sequence Similarity Clusters for the Entities in PDB 1JWM

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 82 221
95 % 54 89 280 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 61 105 231
70 % 61 105 264
50 % 87 161 179
40 % 87 161 194
30 % 179 334 89
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 38 591
95 % 25 41 741 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 52 84 320
70 % 85 152 159
50 % 87 161 178
40 % 87 161 193
30 % 180 334 89
Entity #3 | Chains: C
HA peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Enterotoxin type C-3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60089
95 % 27 29 1401 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 27 29 1427
70 % 27 29 1440
50 % 41 57 506
40 % 43 60 490
30 % 65 89 339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures