Sequence Similarity Clusters for the Entities in PDB 1JWL

Entity #1 | Chains: D
5'-D(*AP*GP*AP*AP*T*TP*GP*TP*GP*AP*GP*CP*GP*GP*AP*TP*AP*AP*CP*AP*AP*TP*T)-3' dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*TP*AP*AP*TP*TP*GP*TP*TP*AP*TP*CP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3' dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
Lactose Operon Repressor protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 2626
95 % 10 11 1551 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 2.2
PDBFlex
90 % 10 11 1582
70 % 10 11 1589
50 % 10 11 1625
40 % 10 11 1643
30 % 10 11 1616

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.