Sequence Similarity Clusters for the Entities in PDB 1JWI

Entity #1 | Chains: A
bitiscetin protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46187
95 % 1 2 34627 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 33069
70 % 1 2 29453
50 % 10 28 1297
40 % 20 60 638
30 % 96 220 104
Entity #2 | Chains: B
platelet aggregation inducer protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46613
95 % 1 2 34888 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 33319
70 % 1 2 29651
50 % 1 2 25293
40 % 21 60 638
30 % 97 220 104

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures