Sequence Similarity Clusters for the Entities in PDB 1JWH

Entity #1 | Chains: A,B
Casein kinase II, alpha chain protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 65 409
95 % 126 127 166 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 126 127 174
70 % 173 175 157
50 % 179 181 186
40 % 179 181 200
30 % 4203 4287 2
Entity #2 | Chains: C,D
Casein kinase II beta chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 2292
95 % 6 7 2580 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 6 7 2649
70 % 6 7 2631
50 % 6 7 2616
40 % 6 7 2554
30 % 6 7 2395

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures